The Samborombon Bay wetland is located on the west margin of the Rio de la Plata estuary, in the Province of Buenos Aires, Argentina. This paper analyses the geological, geomorphologic, soil and vegetation characteristics of the southernmost sector of this wetland and their influence on surface water and groundwater. The study area presents three hydrologic units: coastal dunes, sand sheets and coastal plain. Coastal dunes and sand sheets are recharge zones of high permeability with well-drained, non-saline soils, and a few surface water flows. Changes in the water table are related to rainfall. Groundwater in coastal dunes is Ca–Mg–HCO₃ to Na–HCO₃, and of low salinity (590 mg/l). Groundwater in sand sheets is mainly Na–HCO₃ with a salinity of about 1,020 mg/l. The coastal plain exhibits medium to low permeability sediments, with submerged saline soils poorly drained. Groundwater is Na–Cl with a mean salinity of 16,502 mg/l. A surface hydrological network develops in the coastal plain. Surface water levels near the shoreline are affected by tidal fluctuations; far from the shoreline water accumulates because of poor drainage. Both sectors have Na–Cl water, but the former is more saline. Human intervention and sea level rise may affect the wetland severely.