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dc.date.accessioned 2019-10-07T18:01:34Z
dc.date.available 2019-10-07T18:01:34Z
dc.date.issued 2017
dc.identifier.uri http://sedici.unlp.edu.ar/handle/10915/82872
dc.description.abstract With the greater importance of parallel architectures such as GPUs or Xeon Phi accelerators, the scientific community has developed efficient solutions in the bioinformatics field. In this context, FPGAs begin to stand out as high performance devices with moderate power consumption. This paper presents and evaluates a parallel strategy of the well-known Smith-Waterman algorithm using OpenCL on Intel/Altera’s FPGA for long DNA sequences. We efficiently exploit data and pipeline parallelism on a Intel/Altera Stratix V FPGA reaching upto 114 GCUPS in less than 25 watt power requirements. en
dc.format.extent 500-511 es
dc.language en es
dc.subject Field Programmable Gate Array es
dc.subject Graphic Processor Unit es
dc.subject Field Programmable Gate Array Implementation es
dc.subject Latency Memory Access es
dc.subject Dedicated Memory es
dc.title Accelerating Smith-Waterman Alignment of Long DNA Sequences with OpenCL on FPGA en
dc.type Objeto de conferencia es
sedici.identifier.other https://doi.org/10.1007/978-3-319-56154-7_45 es
sedici.identifier.isbn 978-3-319-56154-7 es
sedici.creator.person Rucci, Enzo es
sedici.creator.person García Sanchez, Carlos es
sedici.creator.person Botella, Guillermo es
sedici.creator.person De Giusti, Armando Eduardo es
sedici.creator.person Naiouf, Marcelo es
sedici.creator.person Prieto-Matias, Manuel es
sedici.description.note Publicado en Lecture Notes in Computer Science book series (LNCS, vol. 10209). es
sedici.subject.materias Ciencias Informáticas es
sedici.description.fulltext true es
mods.originInfo.place Facultad de Informática es
sedici.subtype Objeto de conferencia es
sedici.rights.license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)
sedici.rights.uri http://creativecommons.org/licenses/by-nc-nd/4.0/
sedici.date.exposure 2017-04-27
sedici.relation.event 5th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2017) (Granada, Spain, 26-28 April, 2017) es
sedici.description.peerReview peer-review es
sedici.relation.bookTitle Bioinformatics and Biomedical Engineering. IWBBIO 2017 es

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Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) Except where otherwise noted, this item's license is described as Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)